bioluigi

• bioluigi package
  • Subpackages
    • bioluigi.tasks package
      • Submodules
      • bioluigi.tasks.bcftools module
      • bioluigi.tasks.cutadapt module
      • bioluigi.tasks.fastqc module
      • bioluigi.tasks.gatk module
      • bioluigi.tasks.multiqc module
      • bioluigi.tasks.rsem module
      • bioluigi.tasks.samtools module
      • bioluigi.tasks.sratoolkit module
      • bioluigi.tasks.star module
      • bioluigi.tasks.utils module
      • bioluigi.tasks.vep module
      • Module contents
  • Submodules
  • bioluigi.cli module
  • bioluigi.config module
    • BioluigiConfig
      • BioluigiConfig.bamtofastq_bin
      • BioluigiConfig.bcftools_bin
      • BioluigiConfig.cellranger_bin
      • BioluigiConfig.cutadapt_bin
      • BioluigiConfig.fastqc_bin
      • BioluigiConfig.fastqdump_bin
      • BioluigiConfig.get_task_family()
      • BioluigiConfig.multiqc_bin
      • BioluigiConfig.prefetch_bin
      • BioluigiConfig.rsem_dir
      • BioluigiConfig.samtools_bin
      • BioluigiConfig.scheduler
      • BioluigiConfig.scheduler_extra_args
      • BioluigiConfig.scheduler_partition
      • BioluigiConfig.star_bin
      • BioluigiConfig.vep_bin
      • BioluigiConfig.vep_dir
    • bioluigi
  • bioluigi.scheduled_external_program module
  • Module contents